http://sysbio.unl.edu/PhosphoSVM/ WebIn this work, we presented a novel, versatile and comprehensive program, PPSP (Prediction of PK-specific Phosphorylation site), deployed with approach of Bayesian decision theory. W ith the unambiguous experimental verified training data set, PPSP could predict the bona fide phosphorylation sites accurately for 68 PK groups. How to use PPSP:
iGPS - Prediction of site-specific kinase-substrate relations from ...
WebAug 15, 2024 · DeepPhos can also be used for kinase-specific prediction varying from group, family, subfamily and individual kinase level. The experimental results demonstrated that DeepPhos outperforms competitive predictors in general and kinase-specific phosphorylation site prediction. Availability and implementation: WebJul 18, 2024 · It is encouraging to note that Pf-Phospho can predict the kinase-independent phosphosites with 84% sensitivity, 75% specificity and 78% precision. In addition, it can … factor of volume increase
NetPhos 3.1 - DTU Health Tech - Bioinformatic Services
WebFeb 3, 2012 · In this paper, the phosphorylation site predictors, NetPhos 2.0, NetPhosK, Kinasephos, Scansite, Disphos and Predphosphos, were integrated to construct meta-predictors of rice-specific phosphorylation sites using several methods, including unweighted voting, unreduced weighted voting, reduced unweighted voting and weighted … WebJul 1, 2024 · The novelties of this study are reflected in three perspectives. First, to our knowledge, the experimentally verified kinase-specific phosphorylation-site data used in this study are, to date, the most comprehensive compared to all existing kinase-specific phosphorylation site prediction tools, such as GPS 5.0 and KinasePhos 2.0. WebApr 1, 2024 · The performance of iGPS was shown by critical evaluations and comparisons to be promising for the accurate prediction of in vivo ssKSRs. Based on the prediction results of iGPS, we modeled eukaryotic protein phosphorylation networks (PPNs) at different levels, including whole proteome, pathway and tissues/organs. By additionally … does the uk have oil